5L22 Protein Transport date Jul 30, 2016
title Prtd T1ss Abc Transporter
authors J.L.W.Morgan, J.Zimmer
compound source
Molecule: Abc Transporter (Hlyb Subfamily)
Chain: B, A
Engineered: Yes
 Organism_scientific: Aquifex Aeolicus (Strain Vf5)
Organism_taxid: 224324
Strain: Vf5
Gene: Abct5, Aq_1097
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.223 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.672 97.938 179.823 90.00 100.47 90.00
method X-Ray Diffractionresolution 3.15 Å
ligand ADP, MG enzyme
Gene AQ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of a Type-1 Secretion System ABC Transporter., Morgan JL, Acheson JF, Zimmer J, Structure. 2017 Mar 7;25(3):522-529. doi: 10.1016/j.str.2017.01.010. Epub 2017, Feb 16. PMID:28216041
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (370 Kb) [Save to disk]
  • Biological Unit Coordinates (5l22.pdb1.gz) 363 Kb
  • LPC: Ligand-Protein Contacts for 5L22
  • CSU: Contacts of Structural Units for 5L22
  • Structure Factors (732 Kb)
  • Retrieve 5L22 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L22 from S2C, [Save to disk]
  • Re-refined 5l22 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5L22 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5L22
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l22_B] [5l22_A] [5l22]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5L22
  • Community annotation for 5L22 at PDBWiki (http://pdbwiki.org)

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