5L26 Transport Protein date Jul 31, 2016
title Structure Of Cntnw In An Inward-Facing Substrate-Bound State
authors M.Hirschi, Z.L.Johnson, S.Y.Lee
compound source
Molecule: Nucleoside Permease
Chain: A, B, C
Engineered: Yes
Organism_scientific: Neisseria Wadsworthii 9715
Organism_taxid: 1030841
Gene: Nupc, Hmpref9370_1765
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61
R_factor 0.242 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.220 115.220 264.028 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.40 Å
ligand 6ZL, NA, URI enzyme
Gene HMPREF9370
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceVisualizing multistep elevator-like transitions of a nucleoside transporter., Hirschi M, Johnson ZL, Lee SY, Nature. 2017 Apr 17. doi: 10.1038/nature22057. PMID:28424521
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (189 Kb) [Save to disk]
  • Biological Unit Coordinates (5l26.pdb1.gz) 180 Kb
  • LPC: Ligand-Protein Contacts for 5L26
  • CSU: Contacts of Structural Units for 5L26
  • Structure Factors (745 Kb)
  • Retrieve 5L26 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L26 from S2C, [Save to disk]
  • Re-refined 5l26 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5L26 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L26
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l26_A] [5l26_B] [5l26] [5l26_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5L26
  • Community annotation for 5L26 at PDBWiki (http://pdbwiki.org)

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