5L6K Lyase date May 30, 2016
title Crystal Structure Of Human Carbonic Anhydrase II In Complex Quinoline Oligoamide Foldamer
authors M.Jewginski, B.Langlois D'Estaintot, T.Granier, Y.Huc
compound source
Molecule: Carbonic Anhydrase 2
Chain: A, B
Synonym: Carbonate Dehydratase II,Carbonic Anhydrase C,Cac, Anhydrase II,Ca-II;
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11d
symmetry Space Group: P 1 21 1
R_factor 0.154 R_Free 0.181
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.070 84.870 77.220 90.00 97.81 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 6H0, DMS, GOL, NA, PG4, QUJ, QUK, QVE, QVS, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSelf-Assembled Protein-Aromatic Foldamer Complexes with 2:3 and 2:2:1 Stoichiometries., Jewginski M, Granier T, Langlois d'Estaintot B, Fischer L, Mackereth CD, Huc I, J Am Chem Soc. 2017 Mar 1;139(8):2928-2931. doi: 10.1021/jacs.7b00184. Epub 2017 , Feb 14. PMID:28170240
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (192 Kb) [Save to disk]
  • Biological Unit Coordinates (5l6k.pdb1.gz) 94 Kb
  • Biological Unit Coordinates (5l6k.pdb2.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 5L6K
  • CSU: Contacts of Structural Units for 5L6K
  • Structure Factors (1285 Kb)
  • Retrieve 5L6K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L6K from S2C, [Save to disk]
  • Re-refined 5l6k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5L6K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L6K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l6k] [5l6k_B] [5l6k_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5L6K
  • Community annotation for 5L6K at PDBWiki (http://pdbwiki.org)

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