5L71 Oxidoreductase date Jun 01, 2016
title Crystal Structure Of Mouse Phospholipid Hydroperoxide Glutat Peroxidase 4 (Gpx4)
authors R.Janowski, S.Scanu, T.Madl, D.Niessing
compound source
Molecule: Phospholipid Hydroperoxide Glutathione Peroxidase Mitochondrial;
Chain: A
Synonym: Phgpx,Glutathione Peroxidase 4,Gshpx-4
Ec: 1.11.1.12
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Gpx4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.151 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.260 61.260 113.980 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand EDO enzyme Oxidoreductase E.C.1.11.1.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal and solution structural studies of mouse phospholipid hydroperoxide glutathione peroxidase 4., Janowski R, Scanu S, Niessing D, Madl T, Acta Crystallogr F Struct Biol Commun. 2016 Oct 1;72(Pt 10):743-749. Epub 2016, Sep 22. PMID:27710939
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (5l71.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 5L71
  • CSU: Contacts of Structural Units for 5L71
  • Structure Factors (507 Kb)
  • Retrieve 5L71 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L71 from S2C, [Save to disk]
  • Re-refined 5l71 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Visual 3D analysis of 5L71
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l71] [5l71_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5L71
  • Community annotation for 5L71 at PDBWiki (http://pdbwiki.org)

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