5L73	Signaling Protein	date	Jun 01, 2016
title	Mam Domain Of Human Neuropilin-1
authors	T.Yelland, S.Djordjevic
compound		source
Molecule: Neuropilin-1 Chain: A, B Fragment: Unp Residues 628-813 Synonym: Vascular Endothelial Cell Growth Factor 165 Recept Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nrp1, Nrp, Vegf165r Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.172 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.172 59.558 136.654 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.24 Å
ligand	BCN, CA, TAM	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal Structure of the Neuropilin-1 MAM Domain: Completing the Neuropilin-1 Ectodomain Picture., Yelland T, Djordjevic S, Structure. 2016 Oct 3. pii: S0969-2126(16)30267-2. doi:, 10.1016/j.str.2016.08.017. PMID:27720589

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (5l73.pdb1.gz) 60 Kb LPC: Ligand-Protein Contacts for 5L73 CSU: Contacts of Structural Units for 5L73 Structure Factors (385 Kb) Retrieve 5L73 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5L73 from S2C, [Save to disk] Re-refined 5l73 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5L73 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5L73

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5l73] [5l73_B] [5l73_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5L73: [MAM ] by SMART

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