5L7I	Membrane Protein	date	Jun 03, 2016
title	Structure Of Human Smoothened In Complex With Vismodegib
authors	E.X.B.Byrne, R.Sircar, P.S.Miller, G.Hedger, G.Luchetti, S.Nachte M.D.Tully, L.Mydock-Mcgrane, D.F.Covey, R.F.Rambo, M.S.P.Sansom S.Newstead, R.Rohatgi, C.Siebold
compound		source
Molecule: Smoothened Homolog,Soluble Cytochrome B562,Smooth Homolog; Chain: A, B Synonym: Smo,Protein Gx,Cytochrome B-562,Smo,Protein Gx Engineered: Yes Other_details: Human Smoothened With A Soluble E. Coli Cyto B562 Protein Replacing Smoothened Residues 429 To 444		Organism_scientific: Homo Sapiens, Escherichia Coli Organism_common: Human Organism_taxid: 9606, 562 Gene: Smo, Smoh, Cybc Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek-293s-Gnti- Expression_system_plasmid: Phlsec
symmetry	Space Group: P 1	R_factor 0.245 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.820 71.290 107.020 91.53 98.20 105.92
method	X-Ray Diffraction	resolution	3.30 Å
ligand	MPG, NA, NAG, VIS	enzyme
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (390 Kb) [Save to disk] Biological Unit Coordinates (5l7i.pdb1.gz) 192 Kb Biological Unit Coordinates (5l7i.pdb2.gz) 194 Kb LPC: Ligand-Protein Contacts for 5L7I CSU: Contacts of Structural Units for 5L7I Structure Factors (1239 Kb) Retrieve 5L7I in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5L7I from S2C, [Save to disk] Re-refined 5l7i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5L7I in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5L7I

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5l7i] [5l7i_A] [5l7i_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5L7I: [FRI] [Frizzled ] by SMART

Other resources with information on 5L7I

Community annotation for 5L7I at PDBWiki (http://pdbwiki.org)

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