5LA4	Hydrolase	date	Jun 13, 2016
title	Crystal Structure Of Apo Human Proheparanase
authors	L.Wu, Y.Jin, G.J.Davies
compound		source
Molecule: Heparanase Chain: A Synonym: Endo-Glucoronidase,Heparanase-1,Hpa1 Ec: 3.2.1.166 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hpse, Hep, Hpa, Hpa1, Hpr1, Hpse1, Hse1 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111
symmetry	Space Group: P 21 21 21	R_factor 0.185 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.501 88.061 120.497 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	BMA, EDO, FUC, NAG	enzyme	Hydrolase E.C.3.2.1.166 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Activity-based probes for functional interrogation of retaining beta-glucuronidases., Wu L, Jiang J, Jin Y, Kallemeijn WW, Kuo CL, Artola M, Dai W, van Elk C, van Eijk M, van der Marel GA, Codee JDC, Florea BI, Aerts JMFG, Overkleeft HS, Davies GJ, Nat Chem Biol. 2017 Jun 5. doi: 10.1038/nchembio.2395. PMID:28581485

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (5la4.pdb1.gz) 88 Kb LPC: Ligand-Protein Contacts for 5LA4 CSU: Contacts of Structural Units for 5LA4 Structure Factors (2778 Kb) Retrieve 5LA4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LA4 from S2C, [Save to disk] Re-refined 5la4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LA4 in 3D

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Visual 3D analysis of 5LA4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5la4_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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