5LBF	Oxidoreductase	date	Jun 16, 2016
title	Hif Prolyl Hydroxylase 2 (Phd2egln1) K293kg294e Variant In With Mn(II) And N-[(1-Chloro-4-Hydroxyisoquinolin-3-Yl) Carbonyl]Glycine (Iox3fg2216)
authors	R.Chowdhury, C.J.Schofield
compound		source
Molecule: Egl Nine Homolog 1 Chain: A Fragment: Catalytic Domain (181-426) Synonym: Hypoxia-Inducible Factor Prolyl Hydroxylase 2,Hph- Hydroxylase Domain-Containing Protein 2,Phd2,Sm-20; Ec: 1.14.11.29 Engineered: Yes Mutation: Yes Other_details: Fragment: Catalytic Domain (181-426)		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Egln1, C1orf12, Pnas-118, Pnas-137 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_vector: Pet28a(+) Expression_system_plasmid: Pet28a(+)
symmetry	Space Group: P 63	R_factor 0.160 R_Free 0.185
crystal cell	length a length b length c angle alpha angle beta angle gamma 109.766 109.766 39.545 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	BCT, MN, SO4, UN9	enzyme	Oxidoreductase E.C.1.14.11.29 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for oxygen degradation domain selectivity of the HIF prolyl hydroxylases., Chowdhury R, Leung IK, Tian YM, Abboud MI, Ge W, Domene C, Cantrelle FX, Landrieu I, Hardy AP, Pugh CW, Ratcliffe PJ, Claridge TD, Schofield CJ, Nat Commun. 2016 Aug 26;7:12673. doi: 10.1038/ncomms12673. PMID:27561929

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk] Biological Unit Coordinates (5lbf.pdb1.gz) 111 Kb LPC: Ligand-Protein Contacts for 5LBF CSU: Contacts of Structural Units for 5LBF Structure Factors (326 Kb) Retrieve 5LBF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LBF from S2C, [Save to disk] Re-refined 5lbf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LBF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LBF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lbf] [5lbf_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5LBF: [P4Hc ] by SMART

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