5LCB Bacteriochlorophyll Binding Protein date Jun 20, 2016
title In Situ Atomic-Resolution Structure Of The Baseplate Antenna In Chlorobaculum Tepidum Obtained Combining Solid-State Nmr Spectroscopy, Cryo Electron Microscopy And Polarization Spe
authors J.T.Nielsen, N.V.Kulminskaya, M.Bjerring, J.M.Linnanto, M.Ratsep M.Pedersen, P.H.Lambrev, M.Dorogi, G.Garab, K.Thomsen, C.Jegersc N.U.Frigaard, M.Lindahl, N.C.Nielsen
compound source
Molecule: Bacteriochlorophyll C-Binding Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N
Synonym: Bchl C-Binding,Chlorosome Protein A
Engineered: Yes
 Organism_scientific: Chlorobium Tepidum (Strain Atcc 49652 12025 Nbrc 103806 Tls);
Organism_taxid: 194439
Gene: Csma, Ct1942
Expression_system: Chlorobaculum Tepidum
Expression_system_taxid: 1097
methodElectron Microscopy; Solid-State NMR
ligand BCL enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, N, K, E, B, H, M, C, D, I, G, L


Primary referenceIn situ high-resolution structure of the baseplate antenna complex in Chlorobaculum tepidum., Nielsen JT, Kulminskaya NV, Bjerring M, Linnanto JM, Ratsep M, Pedersen MO, Lambrev PH, Dorogi M, Garab G, Thomsen K, Jegerschold C, Frigaard NU, Lindahl M, Nielsen NC, Nat Commun. 2016 Aug 18;7:12454. doi: 10.1038/ncomms12454. PMID:27534696
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (249 Kb) [Save to disk]
  • Biological Unit Coordinates (5lcb.pdb1.gz) 231 Kb
  • LPC: Ligand-Protein Contacts for 5LCB
  • CSU: Contacts of Structural Units for 5LCB
  • Original NMR restraints for 5LCB from PDB
  • Retrieve 5LCB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LCB from S2C, [Save to disk]
    • View 5LCB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LCB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lcb_G] [5lcb_N] [5lcb_A] [5lcb_J] [5lcb_C] [5lcb_B] [5lcb_M] [5lcb_K] [5lcb_I] [5lcb_F] [5lcb_H] [5lcb_D] [5lcb_L] [5lcb] [5lcb_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LCB
  • Community annotation for 5LCB at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science