5LCK Transferase date Jun 22, 2016
title A Clickable Covalent Erk 12 Inhibitor
authors M.O'Reilly, D.Wright
compound source
Molecule: Mitogen-Activated Protein Kinase 1
Chain: A
Synonym: Mapk 1,Ert1,Extracellular Signal-Regulated Kinase Map Kinase Isoform P42,P42-Mapk,Mitogen-Activated Protein K Mapk 2;
Ec: 2.7.11.24
Engineered: Yes
Other_details: Cys 129 And Cys 163 Have Been Modified In Th Crystallisation Solution To Cme.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk1, Erk2, Prkm1, Prkm2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1 21 1
R_factor 0.164 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.861 70.909 60.417 90.00 109.43 90.00
method X-Ray Diffractionresolution 1.89 Å
ligand 6TT, CME, SO4 enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • chemical synaptic transmissi...

  • Primary referenceIn-gel activity-based protein profiling of a clickable covalent ERK1/2 inhibitor., Lebraud H, Wright DJ, East CE, Holding FP, O'Reilly M, Heightman TD, Mol Biosyst. 2016 Jul 7. PMID:27385078
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (5lck.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 5LCK
  • CSU: Contacts of Structural Units for 5LCK
  • Structure Factors (670 Kb)
  • Retrieve 5LCK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LCK from S2C, [Save to disk]
  • Re-refined 5lck structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LCK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LCK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lck] [5lck_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5LCK: [S_TKc ] by SMART
  • Other resources with information on 5LCK
  • Community annotation for 5LCK at PDBWiki (http://pdbwiki.org)

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