5LCM Dna Binding Protein date Jun 22, 2016
title Structure Of The Rad14 Dna-Binding Domain In Complex With N2 Acetylaminonaphtyl- Guanine Containing Dna
authors S.Schneider, C.Ebert, N.Simon, T.Carell
compound source
Molecule: Dna Repair Protein Rad14
Chain: A, B
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Gene: Rad14, Ymr201c, Ym8325.02c
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693

Molecule: Dna (5'-D(Gpcptpcptpapcp(Aan)Ptpcpapt 3');
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_taxid: 4932

Molecule: Dna (5'-D(Gptpgpaptpgpapcpgptpapgpap
Chain: D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_taxid: 4932
symmetry Space Group: P 41
R_factor 0.231 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.041 53.041 131.345 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 6TW, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural insights into the recognition of N(2)-aryl- and C8-aryl DNA lesions by the repair protein XPA/Rad14., Ebert C, Simon N, Schneider S, Carell T, Chembiochem. 2017 Apr 26. doi: 10.1002/cbic.201700169. PMID:28444956
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (5lcm.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 5LCM
  • CSU: Contacts of Structural Units for 5LCM
  • Structure Factors (410 Kb)
  • Retrieve 5LCM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LCM from S2C, [Save to disk]
  • Re-refined 5lcm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LCM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LCM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lcm_D] [5lcm_B] [5lcm] [5lcm_A] [5lcm_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LCM
  • Community annotation for 5LCM at PDBWiki (http://pdbwiki.org)

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