5LCS Immune System date Jun 22, 2016
title Nmr Structure Of Chicken Avbd7 Defensin
authors C.Landon, K.Loth, H.Meudal
compound source
Molecule: Gallinacin-7
Chain: A
Synonym: Gal 7,Beta-Defensin 7,Gallinacin-5,Gal-5
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
methodSolution NMR
ligand PCA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • chemoattractant activity


    • Primary referenceThe Unusual Resistance of Avian Defensin AvBD7 to Proteolytic Enzymes Preserves Its Antibacterial Activity., Bailleul G, Kravtzoff A, Joulin-Giet A, Lecaille F, Labas V, Meudal H, Loth K, Teixeira-Gomes AP, Gilbert FB, Coquet L, Jouenne T, Bromme D, Schouler C, Landon C, Lalmanach G, Lalmanach AC, PLoS One. 2016 Aug 25;11(8):e0161573. doi: 10.1371/journal.pone.0161573., eCollection 2016. PMID:27561012
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (5lcs.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 5LCS
  • CSU: Contacts of Structural Units for 5LCS
  • Original NMR restraints for 5LCS from PDB
  • Retrieve 5LCS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LCS from S2C, [Save to disk]
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  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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    • Visual 3D analysis of 5LCS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lcs] [5lcs_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LCS
  • Community annotation for 5LCS at PDBWiki (http://pdbwiki.org)

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