5LDV Membrane Protein date Jun 28, 2016
title Crystal Structures Of Momp From Campylobacter Jejuni
authors G.D.Wallat, L.M.G.Ferrara, L.Moynie, J.H.Naismith
compound source
Molecule: Momp Porin
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Campylobacter Jejuni
Organism_taxid: 197
Gene: Momp
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C43
symmetry Space Group: P 63
R_factor 0.193 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.630 90.630 104.400 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand 1PE, CA, OCT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMOMP from Campylobacter jejuni Is a Trimer of 18-Stranded beta-Barrel Monomers with a Ca2+ Ion Bound at the Constriction Zone., Ferrara LG, Wallat GD, Moynie L, Dhanasekar NN, Aliouane S, Acosta-Gutierrez S, Pages JM, Bolla JM, Winterhalter M, Ceccarelli M, Naismith JH, J Mol Biol. 2016 Sep 30. pii: S0022-2836(16)30401-6. doi:, 10.1016/j.jmb.2016.09.021. PMID:27693650
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (5ldv.pdb1.gz) 396 Kb
  • LPC: Ligand-Protein Contacts for 5LDV
  • CSU: Contacts of Structural Units for 5LDV
  • Structure Factors (613 Kb)
  • Retrieve 5LDV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LDV from S2C, [Save to disk]
  • Re-refined 5ldv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LDV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LDV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ldv_A] [5ldv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LDV
  • Community annotation for 5LDV at PDBWiki (http://pdbwiki.org)

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