5LGT	Oxidoreductase	date	Jul 08, 2016
title	Thieno[3,2-B]Pyrrole-5-Carboxamides As Novel Reversible Inhi Histone Lysine Demethylase Kdm1alsd1: Compound 15
authors	A.Mattevi, G.Ciossani
compound		source
Molecule: Lysine-Specific Histone Demethylase 1a Chain: A Synonym: Braf35-Hdac Complex Protein Bhc110,Flavin-Containi Oxidase Domain-Containing Protein 2; Ec: 1.-.-.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kdm1a, Aof2, Kdm1, Kiaa0601, Lsd1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rest Corepressor 1 Chain: B Synonym: Protein Corest Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rcor1, Kiaa0071, Rcor Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: I 2 2 2	R_factor 0.212 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 120.070 178.690 235.610 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	6W3, FAD	enzyme	Oxidoreductase E.C.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Thieno[3,2-b]pyrrole-5-carboxamides as New Reversible Inhibitors of Histone Lysine Demethylase KDM1A/LSD1. Part 2: Structure-Based Drug Design and Structure-Activity Relationship., Vianello P, Sartori L, Amigoni F, Cappa A, Faga G, Fattori R, Legnaghi E, Ciossani G, Mattevi A, Meroni G, Moretti L, Cecatiello V, Pasqualato S, Romussi A, Thaler F, Trifiro P, Villa M, Botrugno OA, Dessanti P, Minucci S, Vultaggio S, Zagarri E, Varasi M, Mercurio C, J Med Chem. 2017 Feb 27. doi: 10.1021/acs.jmedchem.6b01019. PMID:28186757

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk] Biological Unit Coordinates (5lgt.pdb1.gz) 128 Kb LPC: Ligand-Protein Contacts for 5LGT CSU: Contacts of Structural Units for 5LGT Structure Factors (1051 Kb) Retrieve 5LGT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LGT from S2C, [Save to disk] Re-refined 5lgt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LGT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LGT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lgt] [5lgt_A] [5lgt_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5LGT

Community annotation for 5LGT at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---