5LIK Oxidoreductase date Jul 14, 2016
title Crystal Structure Of Human Akr1b10 Complexed With Nadp+ And Inhibitor Mk181
authors A.Cousido-Siah, F.X.Ruiz, A.Mitschler, J.Fanfrlik, M.Kamlar, J.Ve P.Hobza, A.Podjarny
compound source
Molecule: Aldo-Keto Reductase Family 1 Member B10
Chain: X
Synonym: Arl-1,Aldose Reductase-Like,Aldose Reductase-Relat Protein,Harp,Small Intestine Reductase,Si Reductase;
Ec: 1.1.1.-
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Akr1b10, Akr1b11
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31
R_factor 0.201 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.661 78.661 48.221 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.05 Å
ligand EDO, MLY, MLZ, NAP, W8X enzyme Oxidoreductase E.C.1.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceIDD388 polyhalogenated derivatives as probes for an improved structure-based selectivity of AKR1B10 inhibitors., Cousido-Siah A, Ruiz FX, Fanfrlik J, Gimenez-Dejoz J, Mitschler A, Kamlar M, Vesely J, Ajani H, Pares X, Farres J, Hobza P, Podjarny AD, ACS Chem Biol. 2016 Jun 30. PMID:27359042
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (5lik.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 5LIK
  • CSU: Contacts of Structural Units for 5LIK
  • Structure Factors (488 Kb)
  • Retrieve 5LIK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LIK from S2C, [Save to disk]
  • Re-refined 5lik structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LIK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LIK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lik_X] [5lik]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LIK
  • Community annotation for 5LIK at PDBWiki (http://pdbwiki.org)

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