5LU8	Hydrolase	date	Sep 08, 2016
title	Crystal Structure Of Yvad-Cmk Bound Human Legumain (Aep) In With Compound 11b
authors	E.Dall, K.Ye, H.Brandstetter
compound		source
Molecule: Ac-Tyr-Val-Ala-Asp-Chloromethylketone Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Legumain Chain: A Fragment: Unp Residues 26-288 Synonym: Asparaginyl Endopeptidase,Protease,Cysteine 1 Ec: 3.4.22.34 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Lgmn, Prsc1 Expression_system: Leishmania Tarentolae Expression_system_taxid: 5689
symmetry	Space Group: P 42	R_factor 0.219 R_Free 0.251
crystal cell	length a length b length c angle alpha angle beta angle gamma 64.320 64.320 78.910 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	0QE, 5KN, ACE, EMC, NAG, SNN, SO4	enzyme	Hydrolase E.C.3.4.22.34 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Inhibition of delta-secretase improves cognitive functions in mouse models of Alzheimer's disease., Zhang Z, Obianyo O, Dall E, Du Y, Fu H, Liu X, Kang SS, Song M, Yu SP, Cabrele C, Schubert M, Li X, Wang JZ, Brandstetter H, Ye K, Nat Commun. 2017 Mar 27;8:14740. doi: 10.1038/ncomms14740. PMID:28345579

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (5lu8.pdb1.gz) 46 Kb LPC: Ligand-Protein Contacts for 5LU8 CSU: Contacts of Structural Units for 5LU8 Structure Factors (1560 Kb) Retrieve 5LU8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LU8 from S2C, [Save to disk] Re-refined 5lu8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LU8 in 3D

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Visual 3D analysis of 5LU8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lu8_C] [5lu8_A] [5lu8] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5LU8 at PDBWiki (http://pdbwiki.org)

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