5LWE Membrane Protein date Sep 16, 2016
title Crystal Structure Of The Human Cc Chemokine Receptor Type 9 Complex With Vercirnon
authors C.Oswald, M.Rappas, J.Kean, A.S.Dore, J.C.Errey, K.Bennett, F.Defl J.A.Christopher, A.Jazayeri, J.S.Mason, M.Congreve, R.M.Cooke, F.H.Marshall
compound source
Molecule: C-C Chemokine Receptor Type 9
Chain: A, B
Synonym: Ccr-9,G-Protein Coupled Receptor 28,Gpr-9-6
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccr9, Gpr28
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 1
R_factor 0.215 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.571 66.197 68.424 74.02 64.72 62.29
method X-Ray Diffractionresolution 2.80 Å
ligand 79K, CLR, MLI, OLA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIntracellular allosteric antagonism of the CCR9 receptor., Oswald C, Rappas M, Kean J, Dore AS, Errey JC, Bennett K, Deflorian F, Christopher JA, Jazayeri A, Mason JS, Congreve M, Cooke RM, Marshall FH, Nature. 2016 Dec 7. doi: 10.1038/nature20606. PMID:27926729
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (206 Kb) [Save to disk]
  • Biological Unit Coordinates (5lwe.pdb1.gz) 99 Kb
  • Biological Unit Coordinates (5lwe.pdb2.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 5LWE
  • CSU: Contacts of Structural Units for 5LWE
  • Structure Factors (256 Kb)
  • Retrieve 5LWE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LWE from S2C, [Save to disk]
  • Re-refined 5lwe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LWE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LWE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lwe] [5lwe_B] [5lwe_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LWE
  • Community annotation for 5LWE at PDBWiki (http://pdbwiki.org)

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