5LYH Transferase date Sep 28, 2016
title Human Parp14 (Artd8), Catalytic Fragment In Complex With Inh
authors T.Karlberg, A.G.Thorsell, H.Schuler
compound source
Molecule: Poly [Adp-Ribose] Polymerase 14
Chain: A, B
Synonym: Parp-14,Adp-Ribosyltransferase Diphtheria Toxin-Li Artd8,B Aggressive Lymphoma Protein 2;
Ec: 2.4.2.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Parp14, Bal2, Kiaa1268
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: R3 Prare
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 31 2 1
R_factor 0.195 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.032 83.032 122.080 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.17 Å
ligand 7B8 enzyme Transferase E.C.2.4.2.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSmall Molecule Microarray Based Discovery of PARP14 Inhibitors., Peng B, Thorsell AG, Karlberg T, Schuler H, Yao SQ, Angew Chem Int Ed Engl. 2016 Dec 5. doi: 10.1002/anie.201609655. PMID:27918638
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (5lyh.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (5lyh.pdb2.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 5LYH
  • CSU: Contacts of Structural Units for 5LYH
  • Structure Factors (237 Kb)
  • Retrieve 5LYH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LYH from S2C, [Save to disk]
  • Re-refined 5lyh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LYH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LYH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lyh_A] [5lyh] [5lyh_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LYH
  • Community annotation for 5LYH at PDBWiki (http://pdbwiki.org)

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