5LZK Structural Genomics date Sep 29, 2016
title Structure Of The Domain Of Unknown Function Duf1669 From Hum
authors D.M.Pinkas, J.C.Bufton, E.P.Williams, L.Shrestha, N.A.Burgess-Br Delft, C.H.Arrowsmith, A.M.Edwards, C.Bountra, A.Bullock, Struct Genomics Consortium (Sgc)
compound source
Molecule: Protein Fam83b
Chain: A, B
Fragment: Unp Residues 117-294
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fam83b, C6orf143
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta
symmetry Space Group: P 1 21 1
R_factor 0.160 R_Free 0.189
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.498 73.959 63.081 90.00 96.19 90.00
method X-Ray Diffractionresolution 1.58 Å
ligand EDO, IOD enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (5lzk.pdb1.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 5LZK
  • CSU: Contacts of Structural Units for 5LZK
  • Structure Factors (3002 Kb)
  • Retrieve 5LZK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LZK from S2C, [Save to disk]
  • Re-refined 5lzk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LZK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LZK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lzk_B] [5lzk_A] [5lzk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LZK
  • Community annotation for 5LZK at PDBWiki (http://pdbwiki.org)

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