5M5H Protein Transport date Oct 21, 2016
title Ribosome-Bound Yidc Insertase
authors A.Kedrov, S.Wickles, A.H.Crevenna, E.Van Der Sluis, R.Buschauer, O.Berninghausen, D.C.Lamb, R.Beckmann
compound source
Molecule: Membrane Protein Insertase Yidc
Chain: A
Synonym: Foldase Yidc,Membrane Integrase Yidc,Membrane Prot
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Yidc, Ecs88_4129
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.50 Å
Gene ECS88
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Dynamics of the YidC:Ribosome Complex during Membrane Protein Biogenesis., Kedrov A, Wickles S, Crevenna AH, van der Sluis EO, Buschauer R, Berninghausen O, Lamb DC, Beckmann R, Cell Rep. 2016 Dec 13;17(11):2943-2954. doi: 10.1016/j.celrep.2016.11.059. PMID:27974208
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (5m5h.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 5M5H
  • Retrieve 5M5H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M5H from S2C, [Save to disk]
    • View 5M5H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5M5H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m5h_A] [5m5h]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5M5H
  • Community annotation for 5M5H at PDBWiki (http://pdbwiki.org)

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