5M87 Transport Protein date Oct 28, 2016
title Crystal Structure Of Eremococcus Coleocola Manganese Transpo
authors C.Manatschal, I.A.Ehrnstorfer, F.M.Arnold, J.Laederach, R.Dutzle
compound source
Molecule: Divalent Metal Cation Transporter Mnth
Chain: A
Engineered: Yes
 Organism_scientific: Eremococcus Coleocola Acs-139-V-Col8
Organism_taxid: 908337
Gene: Mnth, Hmpref9257_1603
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.232 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
149.200 81.650 96.230 90.00 107.57 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand DMU enzyme
Gene HMPREF9257
Gene
Ontology
ChainFunctionProcessComponent
A
  • symporter activity


    • Primary referenceStructural and mechanistic basis of proton-coupled metal ion transport in the SLC11/NRAMP family., Ehrnstorfer IA, Manatschal C, Arnold FM, Laederach J, Dutzler R, Nat Commun. 2017 Jan 6;8:14033. doi: 10.1038/ncomms14033. PMID:28059071
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (5m87.pdb1.gz) 167 Kb
  • LPC: Ligand-Protein Contacts for 5M87
  • CSU: Contacts of Structural Units for 5M87
  • Structure Factors (319 Kb)
  • Retrieve 5M87 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M87 from S2C, [Save to disk]
  • Re-refined 5m87 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5M87 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5M87
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m87] [5m87_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5M87
  • Community annotation for 5M87 at PDBWiki (http://pdbwiki.org)

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