5M94 Crystal structure of Staphylococcus capitis divalent metal ion transporter (DMT) in complex with nanobody date
authors Dutzler, R., Ehrnstorfer, I.A.
compound source
symmetry
R_factor
R_Free 0.2734
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
Gene BN1317
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • symporter activity


  • Primary referenceCrystal structure of a SLC11 (NRAMP) transporter reveals the basis for transition-metal ion transport., Ehrnstorfer IA, Geertsma ER, Pardon E, Steyaert J, Dutzler R, Nat Struct Mol Biol. 2014 Oct 19. doi: 10.1038/nsmb.2904. PMID:25326704
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (351 Kb) [Save to disk]
  • Biological Unit Coordinates (5m94.pdb1.gz) 171 Kb
  • Biological Unit Coordinates (5m94.pdb2.gz) 174 Kb
  • CSU: Contacts of Structural Units for 5M94
  • Structure Factors (288 Kb)
  • Retrieve 5M94 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M94 from S2C, [Save to disk]
  • Re-refined 5m94 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5M94 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5M94
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m94_D] [5m94_A] [5m94] [5m94_B] [5m94_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5M94
  • Community annotation for 5M94 at PDBWiki (http://pdbwiki.org)

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