5MAJ Hydrolase date Nov 03, 2016
title Cathepsin L In Complex With 4-[Cyclopentyl(Imidazo[1,2-A]Pyr Ylmethyl)Amino]-6-Morpholino-1,3,5-Triazine-2-Carbonitrile
authors A.Kuglstatter, M.Stihle, J.Benz
compound source
Molecule: Cathepsin L1
Chain: A
Synonym: Cathepsin L,Major Excreted Protein,Mep
Ec: 3.4.22.15
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ctsl, Ctsl1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.136 R_Free 0.170
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.700 57.061 75.266 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.00 Å
ligand 7KH, EDO enzyme Hydrolase E.C.3.4.22.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (5maj.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 5MAJ
  • CSU: Contacts of Structural Units for 5MAJ
  • Structure Factors (2712 Kb)
  • Retrieve 5MAJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MAJ from S2C, [Save to disk]
  • Re-refined 5maj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5MAJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5MAJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5maj] [5maj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5MAJ
  • Community annotation for 5MAJ at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science