5MDQ Sugar Binding Protein date Nov 13, 2016
title Crystal Structure Of Outer Membrane Expressed Chitoporin Vhc Vibrio Harveyi
authors M.Zahn, B.Van Den Berg
compound source
Molecule: Chitoporin
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Vibrio Harveyi
Organism_taxid: 669
Gene: Chip
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.230 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
255.730 148.639 54.364 90.00 94.94 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural basis for chitin acquisition by marine Vibrio species., Aunkham A, Zahn M, Kesireddy A, Pothula KR, Schulte A, Basle A, Kleinekathofer U, Suginta W, van den Berg B, Nat Commun. 2018 Jan 15;9(1):220. doi: 10.1038/s41467-017-02523-y. PMID:29335469
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (345 Kb) [Save to disk]
  • Biological Unit Coordinates (5mdq.pdb1.gz) 339 Kb
  • LPC: Ligand-Protein Contacts for 5MDQ
  • CSU: Contacts of Structural Units for 5MDQ
  • Structure Factors (2944 Kb)
  • Retrieve 5MDQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MDQ from S2C, [Save to disk]
    • View 5MDQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5MDQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mdq_C] [5mdq_A] [5mdq_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5MDQ
  • Community annotation for 5MDQ at PDBWiki (http://pdbwiki.org)

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