5MFA Oxidoreductase date Nov 17, 2016
title Crystal Structure Of Human Promyeloperoxidase (Prompo)
authors I.Grishkovskaya, P.G.Furtmueller, C.Obinger, K.Djinovic-Carugo
compound source
Molecule: Myeloperoxidase
Chain: A
Synonym: Mpo
Ec: 1.11.2.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mpo
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
symmetry Space Group: C 1 2 1
R_factor 0.123 R_Free 0.143
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.152 109.151 83.961 90.00 122.66 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand BMA, CA, CL, CSO, HEM, MAN, NAG, PEG, TRS enzyme Oxidoreductase E.C.1.11.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of human promyeloperoxidase (proMPO) and the role of the propeptide for processing and maturation., Grishkovskaya I, Paumann-Page M, Tscheliessnig R, Stampler J, Hofbauer S, Soudi M, Sevcnikar B, Oostenbrink C, Furtmuller PG, Djinovic-Carugo K, Nauseef WM, Obinger C, J Biol Chem. 2017 Mar 27. pii: jbc.M117.775031. doi: 10.1074/jbc.M117.775031. PMID:28348079
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (334 Kb) [Save to disk]
  • Biological Unit Coordinates (5mfa.pdb1.gz) 325 Kb
  • LPC: Ligand-Protein Contacts for 5MFA
  • CSU: Contacts of Structural Units for 5MFA
  • Structure Factors (9553 Kb)
  • Retrieve 5MFA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MFA from S2C, [Save to disk]
  • Re-refined 5mfa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MFA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MFA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mfa_A] [5mfa]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MFA
  • Community annotation for 5MFA at PDBWiki (http://pdbwiki.org)

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