5MG3 Chaperone date Nov 20, 2016
title Em Fitted Model Of Bacterial Holo-Translocon
authors C.Schaffitzel, M.Botte
compound source
Molecule: Protein Translocase Subunit Secy
Chain: Y
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Secy, Prla, B3300, Jw3262
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein Translocase Subunit Sece
Chain: E
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Sece, Prlg, B3981, Jw3944
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein-Export Membrane Protein Secg
Chain: G
Synonym: P12,Preprotein Translocase Band 1 Subunit
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Secg, B3175, Jw3142
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein Translocase Subunit Secd
Chain: D
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Secd, B0408, Jw0398
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein Translocase Subunit Secf
Chain: F
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Secf, B0409, Jw0399
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Membrane Protein Insertase Yidc
Chain: C
Synonym: Foldase Yidc,Inner Membrane Protein Yidc,Membrane Yidc,Oxa1ec;
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Yidc, B3705, Jw3683
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 14.00 Å
Gene
Ontology
ChainFunctionProcessComponent
C


D


E


F


G


Y


Primary referenceA central cavity within the holo-translocon suggests a mechanism for membrane protein insertion., Botte M, Zaccai NR, Nijeholt JL, Martin R, Knoops K, Papai G, Zou J, Deniaud A, Karuppasamy M, Jiang Q, Roy AS, Schulten K, Schultz P, Rappsilber J, Zaccai G, Berger I, Collinson I, Schaffitzel C, Sci Rep. 2016 Dec 7;6:38399. doi: 10.1038/srep38399. PMID:27924919
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (463 Kb) [Save to disk]
  • Biological Unit Coordinates (5mg3.pdb1.gz) 453 Kb
  • CSU: Contacts of Structural Units for 5MG3
  • Retrieve 5MG3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MG3 from S2C, [Save to disk]
  • View 5MG3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MG3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mg3_F] [5mg3_D] [5mg3_E] [5mg3] [5mg3_G] [5mg3_Y] [5mg3_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MG3
  • Community annotation for 5MG3 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science