5MJ6 Hydrolase date Nov 30, 2016
title Ligand-Induced Conformational Change Of Insulin-Regulated Aminopeptidase: Insights On Catalytic Mechanism And Active Plasticity.
authors A.Mpakali, E.Stratikos, E.Saridakis, P.Giastas
compound source
Molecule: Leucyl-Cystinyl Aminopeptidase
Chain: A, B
Fragment: Unp Residues 155-1025
Synonym: Cystinyl Aminopeptidase,Insulin-Regulated Membrane Aminopeptidase,Insulin-Responsive Aminopeptidase,Irap,Oxyto Otase,Placental Leucine Aminopeptidase,P-Lap;
Ec: 3.4.11.3
Engineered: Yes
Other_details: R Is From The Cloning, Tetsqvapa Is The Rho1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lnpep, Otase
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s Gnti-
Expression_system_atcc_number: Crl-3022
Expression_system_tissue: Embryonic Kidney
Expression_system_cell: Transformed With Adenovirus 5 Dna
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.240 143.170 148.990 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.53 Å
ligand 7O2, BMA, BR, MAN, NAG, ZN enzyme Hydrolase E.C.3.4.11.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceLigand-Induced Conformational Change of Insulin-Regulated Aminopeptidase: Insights on Catalytic Mechanism and Active Site Plasticity., Mpakali A, Saridakis E, Harlos K, Zhao Y, Kokkala P, Georgiadis D, Giastas P, Papakyriakou A, Stratikos E, J Med Chem. 2017 Apr 3. doi: 10.1021/acs.jmedchem.6b01890. PMID:28328206
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (318 Kb) [Save to disk]
  • Biological Unit Coordinates (5mj6.pdb1.gz) 157 Kb
  • Biological Unit Coordinates (5mj6.pdb2.gz) 154 Kb
  • LPC: Ligand-Protein Contacts for 5MJ6
  • CSU: Contacts of Structural Units for 5MJ6
  • Structure Factors (2167 Kb)
  • Retrieve 5MJ6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MJ6 from S2C, [Save to disk]
  • Re-refined 5mj6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MJ6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MJ6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mj6_A] [5mj6] [5mj6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MJ6
  • Community annotation for 5MJ6 at PDBWiki (http://pdbwiki.org)

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