5MRW Hydrolase date Dec 27, 2016
title Structure Of The Kdpfabc Complex
authors C.Huang, B.P.Pedersen, D.L.Stokes
compound source
Molecule: Potassium-Transporting Atpase Potassium-Binding S
Chain: A, E, I
Synonym: Atp Phosphohydrolase [Potassium-Transporting] A Ch Potassium-Binding And Translocating Subunit A,Potassium-Tra Atpase A Chain;
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Kdpa, B0698, Jw0686
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: Tk2498

Molecule: Potassium-Transporting Atpase Atp-Binding Subunit
Chain: B, F, J
Synonym: Atp Phosphohydrolase [Potassium-Transporting] B Ch Potassium-Binding And Translocating Subunit B,Potassium-Tra Atpase B Chain;
Ec: 3.6.3.12
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Kdpb, B0697, Jw0685
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: Tk2498

Molecule: Potassium-Transporting Atpase Kdpc Subunit
Chain: C, G, K
Synonym: Atp Phosphohydrolase [Potassium-Transporting] C Ch Potassium-Binding And Translocating Subunit C,Potassium-Tra Atpase C Chain;
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Kdpc, Jd73_10370
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: Tk2498

Molecule: Potassium-Transporting Atpase Kdpf Subunit
Chain: D, H, L
Synonym: Atp Phosphohydrolase [Potassium-Transporting] F Ch Potassium-Binding And Translocating Subunit F,Potassium-Tra Atpase F Chain;
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Kdpf, B4513, Jw0687
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: Tk2498
symmetry Space Group: P 1 21 1
R_factor 0.243 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.720 166.290 196.300 90.00 107.41 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand BOG, K, PX4, SEP enzyme Hydrolase E.C.3.6.3.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E, I


F, J, B


H, D, L


K, C, G


Primary referenceCrystal structure of the potassium-importing KdpFABC membrane complex., Huang CS, Pedersen BP, Stokes DL, Nature. 2017 Jun 29;546(7660):681-685. doi: 10.1038/nature22970. Epub 2017 Jun, 21. PMID:28636601
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1387 Kb) [Save to disk]
  • Biological Unit Coordinates (5mrw.pdb1.gz) 463 Kb
  • Biological Unit Coordinates (5mrw.pdb2.gz) 462 Kb
  • Biological Unit Coordinates (5mrw.pdb3.gz) 466 Kb
  • LPC: Ligand-Protein Contacts for 5MRW
  • CSU: Contacts of Structural Units for 5MRW
  • Structure Factors (1401 Kb)
  • Retrieve 5MRW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MRW from S2C, [Save to disk]
  • Re-refined 5mrw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MRW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MRW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mrw_G] [5mrw_I] [5mrw_E] [5mrw_K] [5mrw_A] [5mrw_J] [5mrw_C] [5mrw_D] [5mrw_H] [5mrw_L] [5mrw_F] [5mrw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MRW
  • Community annotation for 5MRW at PDBWiki (http://pdbwiki.org)

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