5MSF Virus Rna date May 15, 1998
title Ms2 Protein Capsidrna Complex
authors S.Rowsell, N.J.Stonehouse, M.A.Convery, C.J.Adams, A.D.Ellington D.S.Peabody, P.G.Stockley, S.E.V.Phillips
compound source
Molecule: 5'-R(Cpcpgpgpapgpgpapupcpapcpcpapc -3';
Chain: R, S
Synonym: F5, 18-Nt Rna Aptamer
Engineered: Yes
Synthetic: Yes
Other_details: Family 5 Consensus Sequence From In Vitro Se

Molecule: Ms2 Protein Capsid
Chain: A, B, C
Engineered: Yes

Organism_scientific: Enterobacterio Phage Ms2
Organism_taxid: 12022
Gene: Coat Protein
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tg1
Expression_system_vector_type: Ptac
Expression_system_vector: Ptacacp'
symmetry Space Group: H 3 2
R_factor 0.188 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
287.300 287.300 651.600 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
related structures by homologous chain: 1H8J, 2MS2
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCrystal structures of a series of RNA aptamers complexed to the same protein target., Rowsell S, Stonehouse NJ, Convery MA, Adams CJ, Ellington AD, Hirao I, Peabody DS, Stockley PG, Phillips SE, Nat Struct Biol 1998 Nov;5(11):970-5. PMID:9808042
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (5msf.pdb1.gz) 4415 Kb
  • CSU: Contacts of Structural Units for 5MSF
  • Likely Quarternary Molecular Structure file(s) for 5MSF
  • Structure Factors (3315 Kb)
  • Retrieve 5MSF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MSF from S2C, [Save to disk]
  • Re-refined 5msf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MSF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MSF
  • VIPERdb: visual, structural and computational analysis of 5MSF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5MSF, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d5msfa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d5msfb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d5msfc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5msf] [5msf_S] [5msf_C] [5msf_A] [5msf_R] [5msf_B]
  • SWISS-PROT database: [P03612]
  • Domain organization of [COAT_BPMS2] by SWISSPFAM
  • Other resources with information on 5MSF
  • Community annotation for 5MSF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 5MSF from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science