5MVS Transferase date Jan 17, 2017
title Crystal Structure Of Dot1l In Complex With Adenosine And Inh Cpd1 [N6-(2,6-Dichlorophenyl)-N6-(Pent-2-Yn-1-Yl)Quinoline- Diamine]
authors C.Be, E.Koch, C.Gaul, F.Stauffer, H.Moebitz, C.Scheufler
compound source
Molecule: Histone-Lysine N-Methyltransferase, H3 Lysine-79
Chain: A, B
Synonym: Dot1-Like Protein,Histone H3-K79 Methyltransferase Hmtase,Lysine N-Methyltransferase 4;
Ec: 2.1.1.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dot1l, Kiaa1814, Kmt4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 63
R_factor 0.169 R_Free 0.187
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.211 158.211 73.826 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.18 Å
ligand 5JJ, ADN, TLA enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of Potent, Selective, and Structurally Novel Dot1L Inhibitors by a Fragment Linking Approach., Mobitz H, Machauer R, Holzer P, Vaupel A, Stauffer F, Ragot C, Caravatti G, Scheufler C, Fernandez C, Hommel U, Tiedt R, Beyer KS, Chen C, Zhu H, Gaul C, ACS Med Chem Lett. 2017 Feb 14;8(3):338-343. doi: 10.1021/acsmedchemlett.6b00519., eCollection 2017 Mar 9. PMID:28337327
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]
  • Biological Unit Coordinates (5mvs.pdb1.gz) 223 Kb
  • LPC: Ligand-Protein Contacts for 5MVS
  • CSU: Contacts of Structural Units for 5MVS
  • Structure Factors (465 Kb)
  • Retrieve 5MVS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MVS from S2C, [Save to disk]
  • Re-refined 5mvs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MVS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MVS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mvs_B] [5mvs_A] [5mvs]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MVS
  • Community annotation for 5MVS at PDBWiki (http://pdbwiki.org)

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