5MW4	Transferase	date	Jan 18, 2017
title	Crystal Structure Of Dot1l In Complex With Inhibitor Cpd7 [N 1-(7h-Pyrrolo[2,3-D]Pyrimidin-4-Yl)Piperidin-3-Yl)(Methyl)A Propyl)-2-(3-(2-Chloro-3-(2-Methylpyridin-3-Yl)Benzo[B]Thio Yl)Ureido)Acetamide]
authors	C.Be, E.Koch, C.Gaul, F.Stauffer, H.Moebitz, C.Scheufler
compound		source
Molecule: Histone-Lysine N-Methyltransferase, H3 Lysine-79 Chain: A, B Synonym: Dot1-Like Protein,Histone H3-K79 Methyltransferase Hmtase,Lysine N-Methyltransferase 4; Ec: 2.1.1.43 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dot1l, Kiaa1814, Kmt4 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 63	R_factor 0.184 R_Free 0.202
crystal cell	length a length b length c angle alpha angle beta angle gamma 158.360 158.360 74.590 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.19 Å
ligand	5JU, SO4	enzyme	Transferase E.C.2.1.1.43 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Discovery of Potent, Selective, and Structurally Novel Dot1L Inhibitors by a Fragment Linking Approach., Mobitz H, Machauer R, Holzer P, Vaupel A, Stauffer F, Ragot C, Caravatti G, Scheufler C, Fernandez C, Hommel U, Tiedt R, Beyer KS, Chen C, Zhu H, Gaul C, ACS Med Chem Lett. 2017 Feb 14;8(3):338-343. doi: 10.1021/acsmedchemlett.6b00519., eCollection 2017 Mar 9. PMID:28337327

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk] Biological Unit Coordinates (5mw4.pdb1.gz) 107 Kb Biological Unit Coordinates (5mw4.pdb2.gz) 109 Kb LPC: Ligand-Protein Contacts for 5MW4 CSU: Contacts of Structural Units for 5MW4 Structure Factors (1879 Kb) Retrieve 5MW4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5MW4 from S2C, [Save to disk] Re-refined 5mw4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5MW4

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5mw4_B] [5mw4_A] [5mw4] SWISS-PROT database: Domain organization of by SWISSPFAM

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