5N38	Ligase	date	Feb 08, 2017
title	S65dparkin And Pub Complex
authors	A.Kumar, V.K.Chaugule, C.Johnson, R.Toth, R.Sundaramoorthy, A.Kne H.Walden
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Parkin,E3 Ubiquitin-P Ligase Parkin; Chain: A Synonym: Parkin,Parkinson Juvenile Disease Protein 2,Parkin Disease Protein 2,Parkin,Parkinson Juvenile Disease Protein Parkinson Disease Protein 2; Ec: 2.3.2.-,2.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Park2, Prkn Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Polyubiquitin-B Chain: B Engineered: Yes Other_details: Ser65 Is Phosphorylated		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubb Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 63 2 2	R_factor 0.187 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 146.540 146.540 88.440 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	3CN, CL, PEG, SEP, ZN	enzyme	Transferase E.C.2.3.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Parkin-phosphoubiquitin complex reveals cryptic ubiquitin-binding site required for RBR ligase activity., Kumar A, Chaugule VK, Condos TEC, Barber KR, Johnson C, Toth R, Sundaramoorthy R, Knebel A, Shaw GS, Walden H, Nat Struct Mol Biol. 2017 Apr 17. doi: 10.1038/nsmb.3400. PMID:28414322

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk] Biological Unit Coordinates (5n38.pdb1.gz) 149 Kb LPC: Ligand-Protein Contacts for 5N38 CSU: Contacts of Structural Units for 5N38 Structure Factors (698 Kb) Retrieve 5N38 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5N38 from S2C, [Save to disk] Re-refined 5n38 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5N38 in 3D

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Visual 3D analysis of 5N38

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5n38_A] [5n38] [5n38_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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