5N6H Membrane Protein date Feb 15, 2017
title Structure Of The Membrane Integral Lipoprotein N-Acyltransfe From E. Coli
authors C.Y.Huang, C.Boland, N.Howe, M.Wiktor, L.Vogeley, D.Weichert, J.B V.Olieric, M.Wang, M.Caffrey
compound source
Molecule: Apolipoprotein N-Acyltransferase
Chain: A, B
Synonym: Alp N-Acyltransferase,Copper Homeostasis Protein C
Ec: 2.3.1.-
Engineered: Yes
 Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Lnt, Cute, B0657, Jw0654
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell: C43
symmetry Space Group: P 21 21 21
R_factor 0.219 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.200 142.300 199.920 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand GOL, OLC enzyme Transferase E.C.2.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural insights into the mechanism of the membrane integral N-acyltransferase step in bacterial lipoprotein synthesis., Wiktor M, Weichert D, Howe N, Huang CY, Olieric V, Boland C, Bailey J, Vogeley L, Stansfeld PJ, Buddelmeijer N, Wang M, Caffrey M, Nat Commun. 2017 Jul 4;8:15952. doi: 10.1038/ncomms15952. PMID:28675161
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk]
  • Biological Unit Coordinates (5n6h.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (5n6h.pdb2.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 5N6H
  • CSU: Contacts of Structural Units for 5N6H
  • Structure Factors (291 Kb)
  • Retrieve 5N6H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5N6H from S2C, [Save to disk]
  • Re-refined 5n6h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5N6H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5N6H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5n6h_A] [5n6h_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5N6H
  • Community annotation for 5N6H at PDBWiki (http://pdbwiki.org)

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