5N6M Membrane Protein date Feb 15, 2017
title Structure Of The Membrane Integral Lipoprotein N-Acyltransfe From P. Aeruginosa
authors C.Y.Huang, C.Boland, N.Howe, M.Wiktor, L.Vogeley, D.Weichert, J.B V.Olieric, M.Wang, M.Caffrey
compound source
Molecule: Apolipoprotein N-Acyltransferase
Chain: A
Synonym: Alp N-Acyltransferase,Copper Homeostasis Protein C Homolog;
Ec: 2.3.1.-
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa (Strain Atcc 15 22644 Cip 104116 Jcm 14847 Lmg 12228 1c Prs 101
Organism_taxid: 208964
Strain: Atcc 15692 Dsm 22644 Cip 104116 Jcm 14847 L 1c Prs 101 Pao1;
Gene: Lnt, Cute, Pa3984
Expression_system: Pseudomonas Aeruginosa
Expression_system_taxid: 287
Expression_system_cell_line: C41
symmetry Space Group: C 1 2 1
R_factor 0.225 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
152.730 39.230 102.250 90.00 116.26 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand FLC, GOL, OLC enzyme Transferase E.C.2.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into the mechanism of the membrane integral N-acyltransferase step in bacterial lipoprotein synthesis., Wiktor M, Weichert D, Howe N, Huang CY, Olieric V, Boland C, Bailey J, Vogeley L, Stansfeld PJ, Buddelmeijer N, Wang M, Caffrey M, Nat Commun. 2017 Jul 4;8:15952. doi: 10.1038/ncomms15952. PMID:28675161
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (5n6m.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 5N6M
  • CSU: Contacts of Structural Units for 5N6M
  • Structure Factors (93 Kb)
  • Retrieve 5N6M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5N6M from S2C, [Save to disk]
  • Re-refined 5n6m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5N6M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5N6M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5n6m_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5N6M
  • Community annotation for 5N6M at PDBWiki (http://pdbwiki.org)

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