5N9G	Transcription	date	Feb 24, 2017
title	Tfiiib -Tbpbrf2dna And Sant Domain Of Bdp1-
authors	J.Gouge, A.Vannini, N.Guthertz
compound		source
Molecule: Transcription Factor Iiib 50 Kda Subunit Chain: A, F Synonym: Htfiiib50,B-Related Factor 2,Brf-2,Hbrfu Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Brf2, Brfu, Pro1470 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Tata-Box-Binding Protein Chain: B, G Fragment: Unp Residues 159-339 Synonym: Tata Sequence-Binding Protein,Tata-Binding Factor, Factor,Transcription Initiation Factor Tfiid Tbp Subunit; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tbp, Gtf2d1, Tf2d, Tfiid Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Transcription Factor Tfiiib Component B'' Homolog Chain: C, H Fragment: Unp Residues 241-396 Synonym: Transcription Factor Iiib 150,Tfiiib150,Transcript Factor-Like Nuclear Regulator; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bdp1, Kiaa1241, Kiaa1689, Tfnr Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dnarna (27-Mer) Chain: D, I Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Based On U6-2 Promoter
Molecule: Dnarna (25-Mer) Chain: E, J Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1 21 1	R_factor 0.194 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.190 124.080 88.610 90.00 99.51 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	NA	enzyme
Gene Ontology	Chain Function Process Component F, A G, B
Primary reference	Molecular mechanisms of Bdp1 in TFIIIB assembly and RNA polymerase III transcription initiation., Gouge J, Guthertz N, Kramm K, Dergai O, Abascal-Palacios G, Satia K, Cousin P, Hernandez N, Grohmann D, Vannini A, Nat Commun. 2017 Jul 25;8(1):130. doi: 10.1038/s41467-017-00126-1. PMID:28743884

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (492 Kb) [Save to disk] Biological Unit Coordinates (5n9g.pdb1.gz) 244 Kb Biological Unit Coordinates (5n9g.pdb2.gz) 239 Kb LPC: Ligand-Protein Contacts for 5N9G CSU: Contacts of Structural Units for 5N9G Structure Factors (2946 Kb) Retrieve 5N9G in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5N9G from S2C, [Save to disk] Re-refined 5n9g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5N9G in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5N9G

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5n9g_A] [5n9g_C] [5n9g_J] [5n9g_I] [5n9g_D] [5n9g_F] [5n9g_B] [5n9g_H] [5n9g_G] [5n9g_E] SWISS-PROT database: Domain organization of by SWISSPFAM

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