5NAM Signaling Protein date Feb 28, 2017
title Nmr Structure Of Tlr4 Transmembrane Domain (624-670) In Dmpg Bicelles
authors K.S.Mineev, S.A.Goncharuk, M.V.Goncharuk, A.S.Arseniev
compound source
Molecule: Toll-Like Receptor 4
Chain: A
Fragment: Unp Residues 623-670
Synonym: Htoll
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tlr4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl23
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSpatial structure of TLR4 transmembrane domain in bicelles provides the insight into the receptor activation mechanism., Mineev KS, Goncharuk SA, Goncharuk MV, Volynsky PE, Novikova EV, Aresinev AS, Sci Rep. 2017 Jul 31;7(1):6864. doi: 10.1038/s41598-017-07250-4. PMID:28761155
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (5nam.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 5NAM
  • Original NMR restraints for 5NAM from PDB
  • Retrieve 5NAM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NAM from S2C, [Save to disk]
    • View 5NAM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5NAM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nam_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5NAM
  • Community annotation for 5NAM at PDBWiki (http://pdbwiki.org)

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