5NC5 Transport Protein date Mar 03, 2017
title Crystal Structure Of Acrbz In Complex With Antibiotic Puromy
authors D.Du, B.Luisi
compound source
Molecule: Multidrug Efflux Pump Subunit Acrb
Chain: A, B, C
Synonym: Acrab-Tolc Multidrug Efflux Pump Subunit Acrb,Acri Resistance Protein B;
Engineered: Yes
Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Gene: Acrb, Acre, B0462, Jw0451
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Darpin
Chain: D, E
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Multidrug Efflux Pump Accessory Protein Acrz
Chain: F, G, H
Synonym: Acrab-Tolc Multidrug Efflux Pump Accessory Protein Acridine Resistance Protein Z;
Engineered: Yes

Organism_scientific: Escherichia Coli O157:H7
Organism_taxid: 83334
Gene: Acrz, Z0932, Ecs0790
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.183 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
147.245 167.646 249.980 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand D10, D12, DD9, HEX, LMT, PUY enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


H, F, G


Primary referenceAn allosteric transport mechanism for the AcrAB-TolC Multidrug Efflux Pump., Wang Z, Fan G, Hryc CF, Blaza JN, Serysheva II, Schmid MF, Chiu W, Luisi BF, Du D, Elife. 2017 Mar 29;6. pii: e24905. doi: 10.7554/eLife.24905. PMID:28355133
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1083 Kb) [Save to disk]
  • Biological Unit Coordinates (5nc5.pdb1.gz) 1066 Kb
  • LPC: Ligand-Protein Contacts for 5NC5
  • CSU: Contacts of Structural Units for 5NC5
  • Structure Factors (2264 Kb)
  • Retrieve 5NC5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NC5 from S2C, [Save to disk]
  • Re-refined 5nc5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5NC5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NC5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nc5_B] [5nc5_E] [5nc5_C] [5nc5_H] [5nc5] [5nc5_D] [5nc5_A] [5nc5_F] [5nc5_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NC5
  • Community annotation for 5NC5 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science