5NEM Virus date Mar 10, 2017
title Localised Reconstruction Of Alpha V Beta 6 Bound To Foot And Disease Virus O Panasia - Pose A.
authors A.Kotecha, D.Stuart
compound source
Molecule: O Panasia Vp1
Chain: 1
Engineered: Yes
 Organism_scientific: Foot-And-Mouth Disease Virus - Type O
Organism_taxid: 12118
Expression_system: Cricetinae Gen. Sp.
Expression_system_taxid: 36483
Expression_system_cell_line: Bhk 21

Molecule: O Panasia Vp2
Chain: 2
Engineered: Yes
Organism_scientific: Foot-And-Mouth Disease Virus - Type O
Organism_taxid: 12118
Expression_system: Cricetinae Gen. Sp.
Expression_system_taxid: 36483

Molecule: O Panasia Vp3
Chain: 3
Engineered: Yes
Organism_scientific: Foot-And-Mouth Disease Virus - Type O
Organism_taxid: 12118
Expression_system: Cricetinae Gen. Sp.
Expression_system_taxid: 36483

Molecule: O Panasia Vp4
Chain: 4
Engineered: Yes
Organism_scientific: Foot-And-Mouth Disease Virus - Type O
Organism_taxid: 12118
Expression_system: Cricetinae Gen. Sp.
Expression_system_taxid: 36483

Molecule: Integrin Alpha-V
Chain: A
Synonym: Vitronectin Receptor Subunit Alpha
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgav, Msk8, Vnra
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s

Molecule: Integrin Beta-6
Chain: B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgb6
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 10.80 Å
ligand CA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
1


3, 2


4


A


B


Primary referenceRules of engagement between alphavbeta6 integrin and foot-and-mouth disease virus., Kotecha A, Wang Q, Dong X, Ilca SL, Ondiviela M, Zihe R, Seago J, Charleston B, Fry EE, Abrescia NGA, Springer TA, Huiskonen JT, Stuart DI, Nat Commun. 2017 May 23;8:15408. doi: 10.1038/ncomms15408. PMID:28534487
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (283 Kb) [Save to disk]
  • Biological Unit Coordinates (5nem.pdb1.gz) 275 Kb
  • LPC: Ligand-Protein Contacts for 5NEM
  • CSU: Contacts of Structural Units for 5NEM
  • Retrieve 5NEM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NEM from S2C, [Save to disk]
    • View 5NEM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5NEM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nem_3] [5nem_1] [5nem_2] [5nem_A] [5nem_B] [5nem_4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5NEM
  • Community annotation for 5NEM at PDBWiki (http://pdbwiki.org)

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