5NIK Transport Protein date Mar 24, 2017
title Structure Of The Macab-Tolc Abc-Type Tripartite Multidrug Ef
authors A.W.P.Fitzpatrick, S.Llabres, A.Neuberger, J.N.Blaza, X.C.Bai, U S.Murakami, H.W.Van Veen, U.Zachariae, S.H.W.Scheres, B.F.Luisi
compound source
Molecule: Outer Membrane Protein Tolc
Chain: A, B, C
Synonym: Multidrug Efflux Pump Subunit Tolc,Outer Membrane Tolc;
Engineered: Yes
Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Gene: Tolc, Cole1-I, Mtcb, Muka, Refi, Toc, Weea, B3035, Jw
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Macrolide Export Protein Maca
Chain: D, E, F, G, H, I
Engineered: Yes

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Gene: Maca, Ybjy, B0878, Jw0862
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Macrolide Export Atp-Bindingpermease Protein Mac
Chain: J, K
Ec: 3.6.3.-
Engineered: Yes

Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Gene: Macb, Ybjz, B0879, Jw0863
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.30 Å
ligand
enzyme Hydrolase E.C.3.6.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B, C


F, E, H, D, I, G


J, K


Primary referenceStructure of the MacAB-TolC ABC-type tripartite multidrug efflux pump., Fitzpatrick AWP, Llabres S, Neuberger A, Blaza JN, Bai XC, Okada U, Murakami S, van Veen HW, Zachariae U, Scheres SHW, Luisi BF, Du D, Nat Microbiol. 2017 May 15;2:17070. doi: 10.1038/nmicrobiol.2017.70. PMID:28504659
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (702 Kb) [Save to disk]
  • Biological Unit Coordinates (5nik.pdb1.gz) 695 Kb
  • CSU: Contacts of Structural Units for 5NIK
  • Retrieve 5NIK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NIK from S2C, [Save to disk]
  • View 5NIK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NIK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nik_J] [5nik_K] [5nik_B] [5nik_I] [5nik_C] [5nik] [5nik_A] [5nik_F] [5nik_D] [5nik_H] [5nik_E] [5nik_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NIK
  • Community annotation for 5NIK at PDBWiki (http://pdbwiki.org)

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