5NTI Signaling Protein date Apr 28, 2017
title Structural States Of Rorgt: X-Ray Elucidation Of Molecular M And Binding Interactions For Natural And Synthetic Compound
authors J.Kallen
compound source
Molecule: Nuclear Receptor Ror-Gamma
Chain: A, B, C, D
Fragment: C-Terminal Domain, Ligand Binding Domain
Synonym: Nuclear Receptor Rzr-Gamma,Nuclear Receptor Subfam Group F Member 3,Rar-Related Orphan Receptor C,Retinoid-Rel Orphan Receptor-Gamma;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rorc, Nr1f3, Rorg, Rzrg
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Derived Vector

Molecule: Asn-Ser-His-Gln-Lys-Val-Thr-Leu-Leu-Gln-Leu-Leu-L His-Lys-Asn-Glu-Glu-Asn;
Chain: P, Q, R, S
Synonym: Nuclear Factor Rip140, Receptor-Interacting Protei
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.199 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.289 70.000 96.863 90.00 108.07 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand C3S enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (5nti.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (5nti.pdb2.gz) 47 Kb
  • Biological Unit Coordinates (5nti.pdb3.gz) 46 Kb
  • Biological Unit Coordinates (5nti.pdb4.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 5NTI
  • CSU: Contacts of Structural Units for 5NTI
  • Structure Factors (1194 Kb)
  • Retrieve 5NTI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NTI from S2C, [Save to disk]
  • Re-refined 5nti structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5NTI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5NTI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nti_Q] [5nti_C] [5nti_P] [5nti_A] [5nti_R] [5nti_D] [5nti_B] [5nti_S]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5NTI
  • Community annotation for 5NTI at PDBWiki (http://pdbwiki.org)

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