5NU1	Signaling Protein	date	Apr 28, 2017
title	Structural States Of Rorgt: X-Ray Elucidation Of Molecular M And Binding Interactions For Natural And Synthetic Compound
authors	J.Kallen
compound		source
Molecule: Nuclear Receptor Ror-Gamma Chain: A, B Fragment: C-Terminal Domain, Ligand Binding Domain Synonym: Nuclear Receptor Rzr-Gamma,Nuclear Receptor Subfam Group F Member 3,Rar-Related Orphan Receptor C,Retinoid-Rel Orphan Receptor-Gamma; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rorc, Nr1f3, Rorg, Rzrg Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28-Derived Vector
Molecule: Nuclear Receptor-Interacting Protein 1 Chain: P, Q Synonym: Nuclear Factor Rip140,Receptor-Interacting Protein		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1 21 1	R_factor 0.235 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.389 68.802 82.866 90.00 102.92 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	8YB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural States of RORgammat: X-ray Elucidation of Molecular Mechanisms and Binding Interactions for Natural and Synthetic Compounds., Kallen J, Izaac A, Be C, Arista L, Orain D, Kaupmann K, Guntermann C, Hoegenauer K, Hintermann S, ChemMedChem. 2017 Jul 6;12(13):1014-1021. doi: 10.1002/cmdc.201700278. Epub 2017 , Jun 20. PMID:28590087

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (5nu1.pdb1.gz) 45 Kb Biological Unit Coordinates (5nu1.pdb2.gz) 47 Kb LPC: Ligand-Protein Contacts for 5NU1 CSU: Contacts of Structural Units for 5NU1 Structure Factors (1222 Kb) Retrieve 5NU1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5NU1 from S2C, [Save to disk] Re-refined 5nu1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5NU1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5NU1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5nu1_Q] [5nu1_B] [5nu1_A] [5nu1_P] SWISS-PROT database: Domain organization of by SWISSPFAM

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