5NUP Membrane Protein date May 01, 2017
title Structural Basis For Maintenance Of Bacterial Outer Membrane Asymmetry
authors J.Abellon-Ruiz, S.S.Kaptan, A.Basle, B.Claudi, D.Bumann, U.Kleine B.Van Den Berg
compound source
Molecule: Ompk36
Chain: A, B, C
Engineered: Yes
Organism_scientific: Klebsiella Pneumoniae
Organism_taxid: 573
Gene: Ompk36
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Abc Transporter Permease
Chain: D, E, F
Synonym: Lipoprotein,Phospholipid-Binding Lipoprotein Mlaa, Phospholipid-Binding Lipoprotein Mlaa,Vacj Protein;
Engineered: Yes

Organism_scientific: Klebsiella Pneumoniae
Organism_taxid: 573
Gene: Mlaa, Vacj, Agg09_21815, Bb749_07690, Bcb67_11070, Bl143_09030, Bn49_3944, Pmk1_00224, Samea3531778_01593, Sm5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.241 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.377 145.240 232.535 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand C8E, LMT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


F, D, E


Primary referenceStructural basis for maintenance of bacterial outer membrane lipid asymmetry., Abellon-Ruiz J, Kaptan SS, Basle A, Claudi B, Bumann D, Kleinekathofer U, van den Berg B, Nat Microbiol. 2017 Oct 16. doi: 10.1038/s41564-017-0046-x. PMID:29038444
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (552 Kb) [Save to disk]
  • Biological Unit Coordinates (5nup.pdb1.gz) 542 Kb
  • LPC: Ligand-Protein Contacts for 5NUP
  • CSU: Contacts of Structural Units for 5NUP
  • Structure Factors (2901 Kb)
  • Retrieve 5NUP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NUP from S2C, [Save to disk]
  • View 5NUP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NUP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nup_A] [5nup_F] [5nup_C] [5nup_D] [5nup_B] [5nup_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NUP
  • Community annotation for 5NUP at PDBWiki (http://pdbwiki.org)

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