5NVP Viral Protein date May 04, 2017
title Nmr Assignment And Structure Of A Peptide Derived From The F Peptide Of Hiv-1 Gp41 In The Presence Of Dodecylphosphochol Micelles
authors M.A.Jimenez, S.Serrano, J.L.Nieva, N.Huarte
compound source
Molecule: Envelope Glycoprotein,Gp41
Chain: A
Engineered: Yes
Other_details: Residues 1-15 Are Derived From Gp41 Fusion P Correspond To Residues 514-528 Of Gp41. Residues 19-35 Are From Gp41 Mper Region And Correspond To Residues 655-671 Of Residues 16-18 Are The Linker Sequence.
Synthetic: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
methodSolution NMR
ligand ACA enzyme
Primary referenceStructure-Related Roles for the Conservation of the HIV-1 Fusion Peptide Sequence Revealed by Nuclear Magnetic Resonance., Serrano S, Huarte N, Rujas E, Andreu D, Nieva JL, Jimenez MA, Biochemistry. 2017 Oct 17;56(41):5503-5511. doi: 10.1021/acs.biochem.7b00745., Epub 2017 Sep 29. PMID:28930470
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (210 Kb) [Save to disk]
  • Biological Unit Coordinates (5nvp.pdb1.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 5NVP
  • CSU: Contacts of Structural Units for 5NVP
  • Original NMR restraints for 5NVP from PDB
  • Retrieve 5NVP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NVP from S2C, [Save to disk]
  • View 5NVP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NVP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nvp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NVP
  • Community annotation for 5NVP at PDBWiki (http://pdbwiki.org)

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