5O0Z Antibiotic date May 17, 2017
title Structure Of Laspartomycin C In Complex With Geranyl-Phospha
authors H.C.Vlieg, L.H.J.Kleijn, N.I.Martin, B.J.C.Janssen
compound source
Molecule: Laspartomycin C
Chain: A, B
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Streptomyces Viridochromogenes
Organism_taxid: 1938
symmetry Space Group: P 43 3 2
R_factor 0.145 R_Free 0.165
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.933 56.933 56.933 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.28 Å
ligand 2TL, 9GB, 9GE, ACY, CA, CL, CPI, DNP enzyme
Primary referenceHigh-resolution crystal structure reveals molecular details of target recognition by the calcium-dependent lipopeptide antibiotic laspartomycin C., Kleijn LHJ, Vlieg HC, Wood TM, Sastre Torano J, Janssen BJC, Martin NI, Angew Chem Int Ed Engl. 2017 Nov 6. doi: 10.1002/anie.201709240. PMID:29108098
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (5o0z.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 5O0Z
  • CSU: Contacts of Structural Units for 5O0Z
  • Structure Factors (216 Kb)
  • Retrieve 5O0Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O0Z from S2C, [Save to disk]
    • View 5O0Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5O0Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o0z_A] [5o0z_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5O0Z
  • Community annotation for 5O0Z at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science