5O31 Oxidoreductase date May 23, 2017
title Mitochondrial Complex I In The Deactive State
authors J.N.Blaza, K.R.Vinothkumar, J.Hirst
compound source
Molecule: Nadh-Ubiquinone Oxidoreductase Chain 3
Chain: A
Synonym: Nadh Dehydrogenase Subunit 3
Ec: 1.6.5.3
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart

Molecule: Nadh Dehydrogenase [Ubiquinone] Iron-Sulfur Prote Mitochondrial;
Chain: B
Synonym: Complex I-20kd,Ci-20kd,Nadh-Ubiquinone Oxidoreduct Subunit,Psst Subunit;
Ec: 1.6.5.3,1.6.99.3
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart

Molecule: Nadh Dehydrogenase [Ubiquinone] Iron-Sulfur Prote Mitochondrial;
Chain: C
Synonym: Complex I-30kd,Ci-30kd,Nadh-Ubiquinone Oxidoreduct Subunit;
Ec: 1.6.5.3,1.6.99.3
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart

Molecule: Nadh Dehydrogenase [Ubiquinone] Iron-Sulfur Prote Mitochondrial;
Chain: D
Synonym: Complex I-49kd,Ci-49kd,Nadh-Ubiquinone Oxidoreduct Subunit;
Ec: 1.6.5.3,1.6.99.3
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart

Molecule: Nadh Dehydrogenase [Ubiquinone] Flavoprotein 2, Mitochondrial;
Chain: E
Synonym: Nadh Dehydrogenase Subunit II,Nadh-Ubiquinone Oxid 24 Kda Subunit;
Ec: 1.6.5.3,1.6.99.3
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart

Molecule: Nadh Dehydrogenase [Ubiquinone] Flavoprotein 1, Mitochondrial;
Chain: F
Synonym: Complex I-51kd,Ci-51kd,Nadh Dehydrogenase Flavopro Nadh-Ubiquinone Oxidoreductase 51 Kda Subunit;
Ec: 1.6.5.3,1.6.99.3
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart

Molecule: Nadh-Ubiquinone Oxidoreductase Chain 1
Chain: H
Synonym: Nadh Dehydrogenase Subunit 1
Ec: 1.6.5.3
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart

Molecule: Nadh Dehydrogenase [Ubiquinone] Iron-Sulfur Prote Mitochondrial;
Chain: I
Synonym: Complex I-23kd,Ci-23kd,Nadh-Ubiquinone Oxidoreduct Subunit,Tyky Subunit;
Ec: 1.6.5.3,1.6.99.3
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart

Molecule: Nadh-Ubiquinone Oxidoreductase Chain 6
Chain: J
Synonym: Nadh Dehydrogenase Subunit 6
Ec: 1.6.5.3
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart

Molecule: Nadh-Ubiquinone Oxidoreductase Chain 4l
Chain: K
Synonym: Nadh Dehydrogenase Subunit 4l
Ec: 1.6.5.3
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart

Molecule: Nadh-Ubiquinone Oxidoreductase Chain 5
Chain: L
Synonym: Nadh Dehydrogenase Subunit 5
Ec: 1.6.5.3
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart

Molecule: Nadh-Ubiquinone Oxidoreductase Chain 4
Chain: M
Synonym: Nadh Dehydrogenase Subunit 4
Ec: 1.6.5.3
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart

Molecule: Nadh-Ubiquinone Oxidoreductase Chain 2
Chain: N
Synonym: Nadh Dehydrogenase Subunit 2
Ec: 1.6.5.3
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 10, Mitochondrial;
Chain: O
Synonym: Complex I-42kd,Ci-42kd,Nadh-Ubiquinone Oxidoreduct Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 9;
Chain: P
Organism_scientific: Bos Taurus
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 2;
Chain: S
Synonym: Complex I-B8,Ci-B8,Nadh-Ubiquinone Oxidoreductase Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Acyl Carrier Protein, Mitochondrial
Chain: T, U
Synonym: Acp,Ci-Sdap,Nadh-Ubiquinone Oxidoreductase 9.6 Kda
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 5;
Chain: V
Synonym: Complex I Subunit B13,Complex I-13kd-B,Ci-13kd-B,N Ubiquinone Oxidoreductase 13 Kda-B Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 6;
Chain: W
Synonym: Complex I-B14,Ci-B14,Nadh-Ubiquinone Oxidoreductas Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 11;
Chain: Y
Synonym: Complex I-B14.7,Ci-B14.7,Nadh-Ubiquinone Oxidoredu Subunit B14.7;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 1;
Chain: a
Synonym: Complex I-Mwfe,Ci-Mwfe,Nadh-Ubiquinone Oxidoreduct Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 3,Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomplex Subuni
Chain: b
Synonym: Complex I-B9,Ci-B9,Nadh-Ubiquinone Oxidoreductase Subunit,Complex I-B9,Ci-B9,Nadh-Ubiquinone Oxidoreductase B
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Subunit C1, Mitochondrial;
Chain: c
Synonym: Complex I-Kfyi,Ci-Kfyi,Nadh-Ubiquinone Oxidoreduct Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] Iron-Sulfur Prote
Chain: e
Synonym: Complex I-15 Kda,Ci-15 Kda,Nadh-Ubiquinone Oxidore Kda Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 1;
Chain: f
Synonym: Complex I-Mnll,Ci-Mnll,Nadh-Ubiquinone Oxidoreduct Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 11, Mitochondrial;
Chain: g
Synonym: Complex I-Esss,Ci-Esss,Nadh-Ubiquinone Oxidoreduct Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 6,Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex Subunit
Chain: I
Synonym: Complex I-B17,Ci-B17,Nadh-Ubiquinone Oxidoreductas Subunit,Complex I-B17,Ci-B17,Nadh-Ubiquinone Oxidoreductase Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 2;
Chain: j
Organism_scientific: Bos Taurus
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 3;
Chain: k
Organism_scientific: Bos Taurus
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 8;
Chain: l
Organism_scientific: Bos Taurus
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 7;
Chain: o
Synonym: Complex I-B18,Ci-B18,Nadh-Ubiquinone Oxidoreductas Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 10,Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex Subuni Dehydrogenase [Ubiquinone] 1 Beta Subcomplex Subunit 10;
Chain: p
Synonym: Complex I-Pdsw,Ci-Pdsw,Nadh-Ubiquinone Oxidoreduct Subunit,Complex I-Pdsw,Ci-Pdsw,Nadh-Ubiquinone Oxidoreducta Subunit,Complex I-Pdsw,Ci-Pdsw,Nadh-Ubiquinone Oxidoreducta Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 12;
Chain: q
Synonym: Complex I-B17.2,Cib17.2,Nadh-Ubiquinone Oxidoreduc Subunit B17.2;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart

Molecule: Nadh-Ubiquinone Oxidoreductase 75 Kda Subunit, Mitochondrial;
Chain: G
Synonym: Complex I-75kd,Ci-75kd
Ec: 1.6.5.3,1.6.99.3
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart

Molecule: Nadh Dehydrogenase [Ubiquinone] Flavoprotein 3, Mitochondrial;
Chain: s
Synonym: Complex I-9kd,Ci-9kd,Nadh-Ubiquinone Oxidoreductas Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] Iron-Sulfur Prote Mitochondrial;
Chain: Q
Synonym: Complex I-18 Kda,Ci-18 Kda,Complex I-Aqdq,Ci-Aqdq, Ubiquinone Oxidoreductase 18 Kda Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] Iron-Sulfur Prote Mitochondrial;
Chain: R
Synonym: Complex I-13kd-A,Ci-13kd-A,Nadh-Ubiquinone Oxidore Kda-A Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 7;
Chain: r
Synonym: Complex I-B14.5a,Ci-B14.5a,Nadh-Ubiquinone Oxidore Subunit B14.5a;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 5, Mitochondrial;
Chain: h
Synonym: Complex I-Sgdh,Ci-Sgdh,Nadh-Ubiquinone Oxidoreduct Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Subunit C2,Nadh Dehydrogenase [Ubiquinone] 1 Subunit C2;
Chain: d
Synonym: Complex I-B14.5b,Ci-B14.5b,Nadh-Ubiquinone Oxidore Subunit B14.5b,Complex I-B14.5b,Ci-B14.5b,Nadh-Ubiquinone Oxidoreductase Subunit B14.5b;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 8;
Chain: X
Synonym: Complex I-19kd,Ci-19kd,Complex I-Pgiv,Ci-Pgiv,Nadh Ubiquinone Oxidoreductase 19 Kda Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 4;
Chain: m
Synonym: Complex I-B15,Ci-B15,Nadh-Ubiquinone Oxidoreductas Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Beta Subcomplex 9;
Chain: n
Synonym: Complex I-B22,Ci-B22,Nadh-Ubiquinone Oxidoreductas Subunit;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913

Molecule: Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomple 13,Nadh Dehydrogenase [Ubiquinone] 1 Alpha Subcomplex Subun
Chain: Z
Synonym: Cell Death Regulatory Protein Grim-19,Complex I-B1 B16.6,Gene Associated With Retinoic-Interferon-Induced Mort Protein,Grim-19,Nadh-Ubiquinone Oxidoreductase B16.6 Subuni Death Regulatory Protein Grim-19,Complex I-B16.6,Ci-B16.6,G Associated With Retinoic-Interferon-Induced Mortality 19 Pr Grim-19,Nadh-Ubiquinone Oxidoreductase B16.6 Subunit
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.13 Å
ligand FES, FMN, NAP, SF4, ZN enzyme Oxidoreductase E.C.1.6.5.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F


G


H


I


J


K


L


M


N


O


Q


R


S


T, U


V


W


X


Y


a


b


c


d


e


f


i


m


n


o


q
  • electron transfer activity


    • r


    s


    Primary referenceStructure of the Deactive State of Mammalian Respiratory Complex I., Blaza JN, Vinothkumar KR, Hirst J, Structure. 2018 Feb 6;26(2):312-319.e3. doi: 10.1016/j.str.2017.12.014. Epub 2018, Jan 26. PMID:29395787
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1080 Kb) [Save to disk]
  • Biological Unit Coordinates (5o31.pdb1.gz) 1053 Kb
  • LPC: Ligand-Protein Contacts for 5O31
  • CSU: Contacts of Structural Units for 5O31
  • Retrieve 5O31 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O31 from S2C, [Save to disk]
    • View 5O31 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5O31
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o31_P] [5o31_J] [5o31_M] [5o31_L] [5o31_S] [5o31_r] [5o31_d] [5o31_A] [5o31_F] [5o31_O] [5o31_Q] [5o31_K] [5o31_T] [5o31_Y] [5o31_D] [5o31_s] [5o31_C] [5o31_j] [5o31_e] [5o31_W] [5o31_a] [5o31_B] [5o31_V] [5o31_U] [5o31_c] [5o31_i] [5o31_G] [5o31_R] [5o31_n] [5o31_p] [5o31_H] [5o31_o] [5o31_E] [5o31_k] [5o31_N] [5o31_l] [5o31_g] [5o31_q] [5o31_Z] [5o31_I] [5o31_m] [5o31_f] [5o31_b] [5o31_h] [5o31_X]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5O31
  • Community annotation for 5O31 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science