5O67 Membrane Protein date Jun 05, 2017
title Crystal Structure Of The Fapf Polypeptide Transporter - F103
authors S.L.Rouse, S.Hare, S.Lambert, R.M.L.Morgan, W.J.Hawthorne, J.Berr S.J.Matthews
compound source
Molecule: Fapf
Chain: A
Engineered: Yes
Organism_scientific: Pseudomonas Sp. Uk4
Organism_taxid: 452680
Gene: Fapf, Psuk4_00060
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsf1b

Molecule: Fapf
Chain: B, C
Engineered: Yes

Organism_scientific: Pseudomonas Sp. Uk4
Organism_taxid: 452680
Gene: Fapf, Psuk4_00060
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsf1b
symmetry Space Group: C 1 2 1
R_factor 0.232 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
147.753 125.816 81.908 90.00 96.68 90.00
method X-Ray Diffractionresolution 2.84 Å
ligand C8E, LDA enzyme
Primary referenceA new class of hybrid secretion system is employed in Pseudomonas amyloid biogenesis., Rouse SL, Hawthorne WJ, Berry JL, Chorev DS, Ionescu SA, Lambert S, Stylianou F, Ewert W, Mackie U, Morgan RML, Otzen D, Herbst FA, Nielsen PH, Dueholm M, Bayley H, Robinson CV, Hare S, Matthews S, Nat Commun. 2017 Aug 15;8(1):263. doi: 10.1038/s41467-017-00361-6. PMID:28811582
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (5o67.pdb1.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 5O67
  • CSU: Contacts of Structural Units for 5O67
  • Structure Factors (1072 Kb)
  • Retrieve 5O67 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O67 from S2C, [Save to disk]
  • View 5O67 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5O67
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o67_C] [5o67_B] [5o67_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5O67
  • Community annotation for 5O67 at PDBWiki (http://pdbwiki.org)

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