5OB4 Membrane Protein date Jun 26, 2017
title Nmr Spatial Structure Of Her2 Tm Domain Dimer In Dpc Micelle
authors K.S.Mineev, A.S.Arseniev
compound source
Molecule: Receptor Tyrosine-Protein Kinase Erbb-2
Chain: A, B
Fragment: Unp Residues 31-74
Synonym: Metastatic Lymph Node Gene 19 Protein,Mln 19,Proto Neu,Proto-Oncogene C-Erbb-2,Tyrosine Kinase-Type Cell Surfa Receptor Her2,P185erbb2;
Ec: 2.7.10.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Erbb2, Her2, Mln19, Neu, Ngl
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.10.1 BRENDA
Primary referenceNMR relaxation parameters of methyl groups as a tool to map the interfaces of helix-helix interactions in membrane proteins., Lesovoy DM, Mineev KS, Bragin PE, Bocharova OV, Bocharov EV, Arseniev AS, J Biomol NMR. 2017 Oct 23. doi: 10.1007/s10858-017-0146-1. PMID:29063258
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (237 Kb) [Save to disk]
  • Biological Unit Coordinates (5ob4.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 5OB4
  • Original NMR restraints for 5OB4 from PDB
  • Retrieve 5OB4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OB4 from S2C, [Save to disk]
    • View 5OB4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5OB4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ob4_A] [5ob4_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5OB4
  • Community annotation for 5OB4 at PDBWiki (http://pdbwiki.org)

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