5OFP Membrane Protein date Jul 11, 2017
title Structure Of The Antibacterial Peptide Abc Transporter Mcjd Inward Occluded Conformation
authors K.Beis, H.G.Choudhury
compound source
Molecule: Microcin-J25 Export Atp-Bindingpermease Protein
Chain: A
Synonym: Microcin-J25 Immunity Protein,Microcin-J25 Secreti Binding Protein Mcjd;
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Mcjd
Expression_system: Escherichia Coli Str. K-12 Substr. Mg165
Expression_system_taxid: 511145
symmetry Space Group: P 42 2 2
R_factor 0.313 R_Free 0.334
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.850 87.850 351.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.71 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for antibacterial peptide self-immunity by the bacterial ABC transporter McjD., Bountra K, Hagelueken G, Choudhury HG, Corradi V, El Omari K, Wagner A, Mathavan I, Zirah S, Yuan Wahlgren W, Tieleman DP, Schiemann O, Rebuffat S, Beis K, EMBO J. 2017 Oct 16;36(20):3062-3079. doi: 10.15252/embj.201797278. Epub 2017 Sep, 1. PMID:28864543
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (5ofp.pdb1.gz) 180 Kb
  • CSU: Contacts of Structural Units for 5OFP
  • Structure Factors (117 Kb)
  • Retrieve 5OFP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OFP from S2C, [Save to disk]
    • View 5OFP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5OFP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ofp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5OFP
  • Community annotation for 5OFP at PDBWiki (http://pdbwiki.org)

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