5OGE	Membrane Protein	date	Jul 12, 2017
title	Crystal Structure Of A Nucleotide Sugar Transporter
authors	S.Newstead, J.L.Parker
compound		source
Molecule: Gdp-Mannose Transporter 1 Chain: A, B, C, D, E, F, G, H Synonym: Gmt 1,Low Dye-Binding Protein 3,Morphogenesis Chec Dependent Protein 3,Vanadate Resistance Glycosylation Prote Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Vrg4, Gog5, Ldb3, Mcd3, Van2, Vig4, Ygl225w Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4930 Expression_system_strain: Bj5460
symmetry	Space Group: P 1	R_factor 0.280 R_Free 0.306
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.570 102.910 181.410 89.92 90.12 90.06
method	X-Ray Diffraction	resolution	3.22 Å
ligand	OLC	enzyme
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	Structural basis of nucleotide sugar transport across the Golgi membrane., Parker JL, Newstead S, Nature. 2017 Nov 23;551(7681):521-524. doi: 10.1038/nature24464. Epub 2017 Nov, 15. PMID:29143814

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (838 Kb) [Save to disk] Biological Unit Coordinates (5oge.pdb1.gz) 214 Kb Biological Unit Coordinates (5oge.pdb2.gz) 207 Kb Biological Unit Coordinates (5oge.pdb3.gz) 199 Kb Biological Unit Coordinates (5oge.pdb4.gz) 215 Kb LPC: Ligand-Protein Contacts for 5OGE CSU: Contacts of Structural Units for 5OGE Structure Factors (1674 Kb) Retrieve 5OGE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5OGE from S2C, [Save to disk]

View 5OGE in 3D

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Visual 3D analysis of 5OGE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5oge_A] [5oge_H] [5oge_D] [5oge_B] [5oge_C] [5oge_G] [5oge_F] [5oge_E] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5OGE at PDBWiki (http://pdbwiki.org)

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