5P2P	Hydrolase(Carboxylic Ester)	date	Sep 01, 1990
title	X-Ray Structure Of Phospholipase A2 Complexed With A Substrate-Derived Inhibitor
authors	B.W.Dijkstra, M.M.G.M.Thunnissen, K.H.Kalk, J.Drenth
compound		source
Molecule: Phospholipase A2 Chain: A, B Ec: 3.1.1.4 Engineered: Yes		Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 Organ: Pancreas
symmetry	Space Group: P 21 21 21	R_factor R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.570 62.440 85.580 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	CA, DHG	enzyme	Hydrolase E.C.3.1.1.4 BRENDA
related structures	by homologous chain: 1Y6P, 4P2P
Gene Ontology	Chain Function Process Component A, B
Primary reference	X-ray structure of phospholipase A2 complexed with a substrate-derived inhibitor., Thunnissen MM, Ab E, Kalk KH, Drenth J, Dijkstra BW, Kuipers OP, Dijkman R, de Haas GH, Verheij HM, Nature 1990 Oct 18;347(6294):689-91. PMID:2215698

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (5p2p.pdb1.gz) 43 Kb LPC: Ligand-Protein Contacts for 5P2P CSU: Contacts of Structural Units for 5P2P Likely Quarternary Molecular Structure file(s) for 5P2P Retrieve 5P2P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5P2P from S2C, [Save to disk]

View 5P2P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5P2P

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 5P2P, from MSDmotif at EBI Genome occurence of 5P2P's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d5p2pa_, region A [Jmol] [rasmolscript] [script source]     - Domain d5p2pb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5p2p_B] [5p2p_A] [5p2p] SWISS-PROT database: [P00592] Domain organization of [PA21B_PIG] by SWISSPFAM Domain found in 5P2P: [PA2c ] by SMART

Other resources with information on 5P2P

Community annotation for 5P2P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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